Motif HL_76014.1 Version HL_76014.1 of this group appears in releases 0.3 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_009 | 3U5H | 0.0000 | 2 | 5 | LSU rRNA | G | 303 | A | 306 | A | 307 | A | 308 | U | 309 | U | 310 | C | 311 | C | 312 | cWW |
| 2 | HL_4A1B_009 | 4A1B | 0.1789 | 2 | 1 | LSU rRNA | G | 302 | A | 305 | A | 306 | A | 307 | C | 308 | U | 309 | U | 310 | C | 311 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAAUUCC | 1 |
| GAUAAACUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAAUUC | 1 |
| AUAAACUU | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_76014.1 | Only in the child motif |
|---|---|---|---|
| HL_91226.2 Compare | HL_3U5H_009 | HL_4A1B_009 | HL_4ENB_001, HL_1S72_061, HL_1S72_058, HL_2ZJR_054, HL_4FRN_002, HL_2NZ4_015, HL_2JLT_002, HL_4A1B_057, HL_2NZ4_011, HL_3V2F_054, HL_4A1B_060, HL_1S72_014, HL_4GMA_003, HL_2QBG_058, HL_3U5H_058, HL_3U5H_061 |
| HL_82243.1 Compare | HL_4A1B_009 | HL_3U5H_009 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.18 | Avg 0.09 | Max 0.18
Coloring options: