Motif HL_76766.4 Version HL_76766.4 of this group appears in releases 1.10 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-3 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_361D_001 | 361D | 0.5867 | 1 | A | RNA (20-mer) | G | 86 | G | 87 | C | 88 | A | 89|||A | C | 90 | cWW | ntSH | |
| 2 | HL_3EPH_002 | 3EPH | 0.0000 | 4 | E | tRNA | A | 31 | U | 32 | A | 36 | A | 38 | U | 39 | cWW | ||
| 3 | HL_2ZM5_002 | 2ZM5 | 0.2493 | 4 | C | tRNA | A | 31 | U | 32 | A | 36 | A | 38 | U | 39 | cWW | ntsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGCGAC | 1 |
| AUUGCAAAU | 1 |
| AUUGAAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCGA | 1 |
| UUGCAAA | 1 |
| UUGAAAA | 1 |
Release history
| Release | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_76766.4 | Only in the parent motif |
|---|---|---|---|
| HL_76766.3 Compare | HL_3EPH_002, HL_2ZM5_002 | HL_361D_001 | |
| HL_42687.4 Compare | HL_361D_001 | HL_3EPH_002, HL_2ZM5_002 | HL_1GID_006, HL_1GID_003 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-R
- Heat map statistics
- Min 0.25 | Avg 0.33 | Max 0.67
Coloring options: