Motif HL_77232.1 Version HL_77232.1 of this group appears in releases 3.83 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6UFH_003 | 6UFH | 0.6372 | 2 | A | RNA (167-MER) | G | 70 | U | 73 | G | 74 | G | 75 | C | 76 | C | 77 | cWW | |
| 2 | HL_6JXM_002 | 6JXM | 0.2092 | 2 | B | tRNA | G | 41 | A | 44 | A | 45 | A | 46 | A | 47 | C | 48 | cWW | |
| 3 | HL_8H1B_001 | 8H1B | 0.0000 | 3 | tRNA anticodon loop | C | RNA (17-mer) | A | 31 | U | 35 | G | 36 | A | 37 | C | 38 | U | 39 | cWW |
| 4 | HL_1N78_002 | 1N78 | 0.2437 | 3 | tRNA anticodon loop | C | tRNA(Glu) | C | 531 | U | 535 | C | 536 | A | 537 | A | 538 | G | 539 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUGGCC | 1 |
| GCUAAAAC | 1 |
| ACUUUGACU | 1 |
| CCUCUCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUGGC | 1 |
| CUAAAA | 1 |
| CUUUGAC | 1 |
| CUCUCAA | 1 |
Release history
| Release | 3.83 |
|---|---|
| Date | 2024-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA anticodon loop (2)
- (2)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.21 | Avg 0.31 | Max 0.64
Coloring options: