Motif HL_78254.1 Version HL_78254.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | 3-6 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_3IVK_005 | 3IVK | 0.0000 | 1 | M | class I ligase product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 98 | C | 99 | cWW | ntSH | ||
2 | HL_3R9X_002 | 3R9X | 0.5204 | 1 | C | RNA301 | G | 1514 | G | 1515 | G | 1516 | G | 1517 | A | 1518 | C | 1520 | C | 1521 | ncWW | ncWW | ||
3 | HL_2CSX_002 | 2CSX | 0.8295 | 2 | C | RNA (75-MER) | U | 31 | C | 32 | U | 33 | C | 34 | A | 35 | A | 38 | G | 39 | cWW | |||
4 | HL_7MLW_004 | 7MLW | 0.9154 | 1 | F | Guanidine-I riboswitch | C | 79 | G | 80 | U | 81 | U | 82 | G | 84 | C | 85 | G | 86 | cWW | ncWW | tSWa |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUUAAAAC | 1 |
GGGGAACC | 1 |
UCUCAUAAG | 1 |
CGUUCGCG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUAAAA | 1 |
GGGAAC | 1 |
CUCAUAA | 1 |
GUUCGC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.52 | Avg 0.59 | Max 0.97
Coloring options: