Motif HL_78731.1 Version HL_78731.1 of this group appears in releases 0.3 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3D0U_002 | 3D0U | 0.1352 | 0 | Pseudoknot geometry | A | Lysine Riboswitch RNA | U | 90 | U | 91 | C | 92 | C | 93 | U | 94 | C | 95 | C | 96 | C | 97 | G | 98 | cWW | |
| 2 | HL_3DIR_002 | 3DIR | 0.0000 | 0 | A | RNA (174-MER) | U | 93 | U | 94 | C | 95 | C | 96 | U | 97 | C | 98 | C | 99 | C | 100 | G | 101 | cWW | ntWH | |
| 3 | HL_2HO7_003 | 2HO7 | 0.4011 | 0 | B | glmS ribozyme RNA | C | 78 | U | 79 | U | 80 | C | 81 | C | 82 | U | 83 | G | 84 | C | 85 | G | 86 | cWW | ||
| 4 | HL_3V2F_002 | 3V2F | 0.8866 | 0 | A | 23S Ribosomal RNA | C | 87 | G | 88 | G | 89 | U | 90 | A | 92 | G | 93 | C | 94 | G | 94|||A | G | 95 | cWW | ||
| 5 | HL_2QBG_004 | 2QBG | 0.8561 | 0 | B | 23S rRNA | U | 87 | G | 88 | A | 89 | U | 90 | A | 91 | U | 92 | G | 93 | A | 94 | A | 95 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCUCCCG | 2 |
| CUUCCUGCG | 1 |
| CGGUAGCGG | 1 |
| UGAUAUGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCCUCCC | 2 |
| UUCCUGC | 1 |
| GGUAGCG | 1 |
| GAUAUGA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_78731.1 | Only in the parent motif |
|---|---|---|---|
| HL_29369.2 Compare | HL_2QBG_004, HL_3D0U_002, HL_3DIR_002 | HL_2HO7_003, HL_3V2F_002 | HL_1F27_001, HL_3PYO_002 |
| HL_83277.1 Compare | HL_2HO7_003 | HL_3DIR_002, HL_2QBG_004, HL_3V2F_002, HL_3D0U_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_78731.1 | Only in the child motif |
|---|---|---|---|
| HL_78731.2 Compare | HL_3DIR_002, HL_2HO7_003, HL_2QBG_004, HL_3D0U_002 | HL_3V2F_002 | HL_4NVV_002 |
- Annotations
-
- (4)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.14 | Avg 0.55 | Max 0.90
Coloring options: