Motif HL_78735.1 Version HL_78735.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3D2V_004 | 3D2V | 0.4893 | 1 | T-loop related (H) | B | TPP riboswitch (THI element) | G | 54 | G | 55 | U | 56 | A | 57 | A | 58 | U | 59 | C | 61 | cWW | |
| 2 | HL_2HOJ_002 | 2HOJ | 0.4394 | 1 | A | TPP riboswitch (THI element) | G | 66 | A | 67 | U | 68 | A | 69 | A | 70 | U | 71 | C | 73 | cWW | ||
| 3 | HL_1S72_038 | 1S72 | 0.4177 | 0 | 0 | LSU rRNA | G | 1557 | C | 1558 | A | 1559 | U | 1561 | C | 1562 | G | 1563 | C | 1564 | cWW | ncWW | |
| 4 | HL_2XZM_008 | 2XZM | 0.0000 | 2 | A | SSU rRNA | U | 321 | G | 322 | U | 323 | U | 325 | U | 326 | G | 327 | A | 329 | cWW | ||
| 5 | HL_3O30_007 | 3O30 | 0.2253 | 2 | 1 | SSU rRNA | G | 330 | A | 331 | U | 332 | G | 334 | U | 335 | G | 336 | C | 338 | cWW | ||
| 6 | HL_2AW7_006 | 2AW7 | 0.3173 | 2 | A | SSU rRNA | G | 259 | G | 260 | U | 261 | A | 263 | C | 264 | G | 265 | C | 267 | cWW | ||
| 7 | HL_3D2V_002 | 3D2V | 0.4540 | 1 | T-loop related | A | TPP riboswitch (THI element) | G | 54 | G | 55 | U | 56 | A | 57 | A | 58 | U | 59 | C | 61 | cWW | |
| 8 | HL_1FJG_006 | 1FJG | 0.5305 | 2 | GNRA related (H) | A | SSU rRNA | G | 259 | G | 260 | U | 261 | A | 263 | U | 264 | G | 265 | C | 267 | cWW | |
| 9 | HL_3NPB_003 | 3NPB | 0.5486 | 2 | A | SAM-I riboswitch | C | 94 | U | 95 | C | 96 | A | 98 | A | 99 | C | 100 | G | 102 | cWW | ||
| 10 | HL_2GDI_004 | 2GDI | 0.5512 | 1 | Y | TPP riboswitch (THI element) | G | 66 | A | 67 | U | 68 | A | 69 | A | 70 | U | 71 | C | 73 | cWW | ||
| 11 | HL_3Q1Q_005 | 3Q1Q | 0.5842 | 2 | B | RNase P class A | G | 165 | G | 166 | U | 167 | A | 169 | G | 170 | A | 171 | C | 173 | cWW | ||
| 12 | HL_1U9S_003 | 1U9S | 0.5878 | 2 | A | RNase P class A | G | 181 | G | 182 | U | 183 | A | 185 | G | 186 | A | 187 | C | 189 | cWW | ||
| 13 | HL_2GDI_002 | 2GDI | 0.8444 | 1 | Other HL | X | TPP riboswitch (THI element) | G | 66 | A | 67 | U | 68 | A | 69 | A | 70 | U | 71 | C | 73 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAAUGC | 3 |
| GGUAAUGC | 2 |
| GGUAAGAGC | 2 |
| GCAUCGC | 1 |
| UGUAUUGGA | 1 |
| GAUAGUGGC | 1 |
| GGUAACGGC | 1 |
| GGUAAUGGC | 1 |
| CUCGAACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAUG | 3 |
| GUAAUG | 2 |
| GUAAGAG | 2 |
| CAUCG | 1 |
| GUAUUGG | 1 |
| AUAGUGG | 1 |
| GUAACGG | 1 |
| GUAAUGG | 1 |
| UCGAACA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_78735.1 | Only in the child motif |
|---|---|---|---|
| HL_78735.2 Compare | HL_2GDI_002, HL_1U9S_003, HL_2GDI_004, HL_2HOJ_002, HL_3D2V_002, HL_3NPB_003, HL_3D2V_004, HL_1FJG_006, HL_3Q1Q_005, HL_3O30_007, HL_2XZM_008, HL_2AW7_006 | HL_1S72_038 |
- Annotations
-
- (9)
- GNRA related (H) (1)
- Other HL (1)
- T-loop related (1)
- T-loop related (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.04 | Avg 0.48 | Max 0.95
Coloring options: