Motif HL_78735.2 Version HL_78735.2 of this group appears in releases 0.2 to 0.2

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7
1	HL_3Q1Q_005	3Q1Q	0.5730	2		B	RNase P RNA	G	165	G	166	U	167	A	169	G	170	A	171	C	173	cWW
2	HL_3D2V_002	3D2V	0.5677	1	T-loop related	A	TPP riboswitch (THI element)	G	54	G	55	U	56	A	57	A	58	U	59	C	61	cWW
3	HL_2GDI_004	2GDI	0.5314	1		Y	TPP riboswitch	G	66	A	67	U	68	A	69	A	70	U	71	C	73	cWW
4	HL_3D2V_004	3D2V	0.5427	1	T-loop related (H)	B	TPP riboswitch (THI element)	G	54	G	55	U	56	A	57	A	58	U	59	C	61	cWW
5	HL_2GDI_002	2GDI	0.5287	1	Other HL	X	TPP riboswitch	G	66	A	67	U	68	A	69	A	70	U	71	C	73	cWW
6	HL_2XZM_008	2XZM	0.4518	2		A	18S RRNA	U	321	G	322	U	323	U	325	U	326	G	327	A	329	cWW
7	HL_2AW7_006	2AW7	0.2787	2		A	16S ribosomal RNA	G	259	G	260	U	261	A	263	C	264	G	265	C	267	cWW
8	HL_1FJG_006	1FJG	0.0000	2	GNRA related (H)	A	SSU rRNA	G	259	G	260	U	261	A	263	U	264	G	265	C	267	cWW
9	HL_3O30_007	3O30	0.2253	2		1	18S ribosomal RNA	G	330	A	331	U	332	G	334	U	335	G	336	C	338	cWW
10	HL_3NPB_003	3NPB	0.4125	2		A	TL5 RNA	C	94	U	95	C	96	A	98	A	99	C	100	G	102	cWW
11	HL_1U9S_003	1U9S	0.4467	2		A	RIBONUCLEASE P	G	181	G	182	U	183	A	185	G	186	A	187	C	189	cWW
12	HL_2HOJ_002	2HOJ	0.5884	1		A	thi-box riboswitch	G	66	A	67	U	68	A	69	A	70	U	71	C	73	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUAAUGC	3
GGUAAGAGC	2
GGUAAUGC	2
UGUAUUGGA	1
GGUAACGGC	1
GGUAAUGGC	1
GAUAGUGGC	1
CUCGAACAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUAAUG	3
GUAAGAG	2
GUAAUG	2
GUAUUGG	1
GUAACGG	1
GUAAUGG	1
AUAGUGG	1
UCGAACA	1

Release history

Release	0.2
Date	2011-12-08
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in HL_78735.2	Only in the parent motif
HL_78735.1 Compare	HL_2GDI_002, HL_1U9S_003, HL_2GDI_004, HL_2HOJ_002, HL_3D2V_002, HL_3NPB_003, HL_3D2V_004, HL_1FJG_006, HL_3Q1Q_005, HL_3O30_007, HL_2XZM_008, HL_2AW7_006		HL_1S72_038

Children motifs

Child motif	Common motif instances	Only in HL_78735.2	Only in the child motif
HL_18781.1 Compare	HL_2XZM_008, HL_3NPB_003, HL_1FJG_006, HL_3Q1Q_005, HL_1U9S_003, HL_2AW7_006	HL_2GDI_002, HL_2GDI_004, HL_2HOJ_002, HL_3D2V_002, HL_3D2V_004, HL_3O30_007	HL_3U5F_008, HL_2QBG_023, HL_4A1B_012, HL_1S72_031, HL_2QBG_031, HL_3U5H_028, HL_1E8O_001, HL_1NBS_002, HL_2ZJR_029, HL_3V2F_055, HL_2ZJR_055, HL_3V2F_022, HL_1QA6_002, HL_4A1B_032, HL_2IL9_006
HL_97270.1 Compare	HL_2GDI_002, HL_2GDI_004, HL_2HOJ_002	HL_1U9S_003, HL_3D2V_002, HL_3NPB_003, HL_3D2V_004, HL_2XZM_008, HL_1FJG_006, HL_2AW7_006, HL_3O30_007, HL_3Q1Q_005	HL_3V2F_010, HL_4A1B_005, HL_3U5F_006, HL_2A64_002, HL_2XZM_006, HL_4A1B_037, HL_2QBG_011, HL_1S72_039, HL_2ZJR_009, HL_1S72_010, HL_3DHS_002, HL_3U5H_005
HL_23290.1 Compare	HL_3D2V_002	HL_2GDI_002, HL_1U9S_003, HL_2GDI_004, HL_2HOJ_002, HL_3NPB_003, HL_3D2V_004, HL_2XZM_008, HL_1FJG_006, HL_2AW7_006, HL_3O30_007, HL_3Q1Q_005	HL_1VFG_001

Annotations: (8)
GNRA related (H) (1)
Other HL (1)
T-loop related (1)
T-loop related (H) (1)
Basepair signature
Heat map statistics: Min 0.04 | Avg 0.44 | Max 0.66

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