Motif HL_78940.1 Version HL_78940.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7JRS_004 | 7JRS | 0.0000 | 0 | A | RNA 3D nanocage | G | 63 | A | 64 | A | 65 | G | 66 | C | 67 | A | 68 | G | 69 | G | 70 | C | 71 | A | 72 | C | 73 | ncWW | tWW | |
| 2 | HL_7A0S_002 | 7A0S | 0.7273 | 0 | X | LSU rRNA | C | 85 | U | 86 | G | 87 | G | 88 | A | 89 | G | 90 | A | 91 | U | 92 | A | 93 | C | 94 | G | 95 | cWW | ncWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGCAGGCAC | 1 |
| CUGGAGAUACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGCAGGCA | 1 |
| UGGAGAUAC | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.73 | Avg 0.36 | Max 0.73
Coloring options: