HL_79299.11

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	1-5	2-4
1	HL_4V9F_005	4V9F	0.5390	2		0	LSU rRNA	C	136	U	137	C	139	G	140	G	142	cWW	tSW
2	HL_3V7E_002	3V7E	0.4975	1	Other HL	C	SAM-I riboswitch	C	65	U	66	C	68	G	69	G	70	cWW
3	HL_5J7L_005	5J7L	0.4089	1	UNCG	AA	SSU rRNA	C	207	U	208	C	210	G	211	G	212	cWW	ntSW
4	HL_6CZR_082	6CZR	0.3395	1		1a	SSU rRNA	C	415	U	416	C	418	G	419	G	420	cWW	tSW
5	HL_5J7L_171	5J7L	0.2082	1	UNCG	DA	LSU rRNA	C	1533	U	1534	C	1536	G	1537	G	1538	cWW	tSW
6	HL_1KUQ_001	1KUQ	0.1469	1	UNCG	B	16S RIBOSOMAL RNA FRAGMENT	C	8	U	9	C	11	G	12	G	13	cWW	tSW
7	HL_5J7L_009	5J7L	0.1551	1	UNCG	AA	SSU rRNA	C	342	U	343	C	345	G	346	G	347	cWW	tSW
8	HL_5TBW_043	5TBW	0.1616	1	UNCG	1	LSU rRNA	C	1923	U	1924	C	1926	G	1927	G	1928	cWW	tSW
9	HL_4WF9_040	4WF9	0.1586	1	UNCG	X	LSU rRNA	C	1735	U	1736	C	1738	G	1739	G	1740	cWW	tSW
10	HL_4PMI_004	4PMI	0.1085	1	UNCG	A	Rev-Response-Element RNA	C	53	U	54	C	56	G	57	G	58	cWW	tSW
11	HL_5Y85_004	5Y85	0.0000	1	UNCG	D	DNA/RNA (50-MER)	C	28	U	29	C	31	G	32	G	33	cWW	tSW
12	HL_5D5L_003	5D5L	0.0752	1	UNCG	A	PreQ1-II riboswitch	C	60	U	61	C	63	G	64	G	65	cWW	tSW
13	HL_4JF2_003	4JF2	0.0947	1	UNCG	A	PreQ1-II Riboswitch	C	60	U	61	C	63	G	64	G	65	cWW	tSW
14	HL_5LYS_002	5LYS	0.0919	1	UNCG	B	7SK RNA	C	48	U	48\|\|\|A	C	48\|\|\|C	G	48\|\|\|D	G	60	cWW	tSW
15	HL_5J7L_175	5J7L	0.0982	1	UNCG	DA	LSU rRNA	C	1691	U	1692	C	1694	G	1695	G	1696	cWW	tSW
16	HL_7RQB_042	7RQB	0.1077	1		1A	LSU rRNA	C	1691	U	1692	C	1694	G	1695	G	1696	cWW	tSW
17	HL_6QN3_003	6QN3	0.1206	1		B	Glutamine-II	C	9	U	10	C	12	G	13	G	14	cWW	tSW
18	HL_1UN6_003	1UN6	0.1167	1	UNCG	F	5S RIBOSOMAL RNA	C	15	U	16	C	18	G	19	G	64	cWW	tSW
19	HL_4AY2_001	4AY2	0.1291	1	UNCG	C	5'-R-PPP(GPGPCPGPCPGPGPCPUPUPCPGPGPCP CPGPCPGPCP*C)-3'	C	8	U	9	C	11	G	12	G	13	cWW	tSW
20	HL_6QN3_001	6QN3	0.1098	1		A	Glutamine-II	C	9	U	10	C	12	G	13	G	14	cWW	tSW
21	HL_4LFB_031	4LFB	0.1219	1	UNCG	A	SSU rRNA	C	1449	U	1450	C	1452	G	1453	G	1454	cWW	tSW
22	HL_4PDB_001	4PDB	0.1036	1	UNCG	I	SELEX RNA aptamer	C	17	U	18	C	20	G	21	G	22	cWW	tSW
23	HL_4V9F_044	4V9F	0.0995	1	UNCG	0	LSU rRNA	C	1769	U	1770	C	1772	G	1773	G	1774	cWW	tSW
24	HL_4LFB_009	4LFB	0.1122	1	UNCG	A	SSU rRNA	C	342	U	343	C	345	G	346	G	347	cWW	tSW
25	HL_7A0S_042	7A0S	0.1359	1		X	LSU rRNA	C	1708	U	1709	C	1711	G	1712	G	1713	cWW	tSW
26	HL_4LFB_011	4LFB	0.0980	1	UNCG	A	SSU rRNA	C	419	U	420	C	422	G	423	G	424	cWW	tSW
27	HL_5J7L_011	5J7L	0.0844	1	UNCG	AA	SSU rRNA	C	419	U	420	C	422	G	423	G	424	cWW	tSW
28	HL_5J7L_030	5J7L	0.1272	1	UNCG	AA	SSU rRNA	C	1449	U	1450	C	1452	G	1453	G	1454	cWW	tSW
29	HL_6SY6_001	6SY6	0.1162	1		D	RNA (36-MER)	C	19	U	20	C	22	G	23	G	24	cWW	tSW
30	HL_3U4M_001	3U4M	0.1349	1	UNCG	B	LSU rRNA	C	2143	U	2144	C	2146	G	2147	G	2148	cWW	tSW
31	HL_2HW8_001	2HW8	0.1134	1	UNCG	B	36-MER	C	15	U	16	C	18	G	19	G	20	cWW	tSW
32	HL_6CZR_080	6CZR	0.1347	1		1a	SSU rRNA	C	338	U	339	C	341	G	342	G	343	cWW	tSW
33	HL_4V88_196	4V88	0.1254	1	UNCG	A6	SSU rRNA	C	414	C	415	A	417	G	418	G	419	cWW	tSW
34	HL_1I6U_001	1I6U	0.1533	1	UNCG	C	16S RRNA FRAGMENT	C	16	U	17	C	19	G	20	G	21	cWW	tSW
35	HL_1NBS_006	1NBS	0.2020	1	UNCG	B	RNase P class B	C	152	U	153	C	155	G	156	G	157	cWW	tSW
36	HL_5ML7_002	5ML7	0.2076	1	UNCG	B	23S ribosomal RNA	C	2187	G	2188	U	2190	A	2191	G	2192	cWW
37	HL_6DLR_002	6DLR	0.2499	1		A	Guanidine-I riboswitch	A	61	U	62	C	64	G	65	U	66	cWW	tSW
38	HL_3IGI_008	3IGI	0.2940	1	UNCG	A	Group IIC intron	G	338	U	339	C	341	G	342	C	343	cWW	tSW
39	HL_6CK5_001	6CK5	0.6754	1		A	Guanidine-I riboswitch	A	27	U	28	U	30	G	31	U	32	cWW	tSW
40	HL_4U7U_001	4U7U	0.5202	1	UNCG	L	crRNA	C	51	G	52	C	54	A	55	G	56	cWW	tSW
41	HL_6DME_002	6DME	0.8255	1		A	ppGpp Riboswitch	C	57	U	58	C	60	G	61	G	62	cWW
42	HL_2NUE_001	2NUE	0.6267	1	Other HL	C	46-MER	C	21	G	22	A	24	A	25	G	26	cWW	ncSW
43	HL_6JQ6_004	6JQ6	0.6552	1		U	RNA (81-MER)	C	45	U	46	C	48	G	49	G	50	cWW
44	HL_1P6V_001	1P6V	0.6761	1	Other HL	B	45-MER	C	26	U	27	C	29	G	30	G	31	cWW
45	HL_2CZJ_007	2CZJ	0.8332	1	Other HL	H	tmRNA (63-MER)	G	25	U	26	C	28	G	29	C	30	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUCGG	29
CUACGG	6
GUUCGC	2
CUUCGCG	1
CUCCGG	1
CCAAGG	1
CGCUAG	1
AUUCGU	1
AUUUGU	1
CGCCAG	1
CGCAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCG	32
UACG	6
UUCGC	1
UCCG	1
CAAG	1
GCUA	1
UUUG	1
GCCA	1
GCAA	1

Release history

Release	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_79299.11 Version HL_79299.11 of this group appears in releases 3.62 to 3.76 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_79299.11 Version HL_79299.11 of this group appears in releases 3.62 to 3.76

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Csv

Json