Motif HL_79956.2 Version HL_79956.2 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 2-6 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_056 | 1VW3 | 0.5390 | 0 | A | U | 3002 | U | 3003 | A | 3004 | A | 3005 | U | 3006 | A | 3007 | cWW | ncwW | ||
| 2 | HL_4CUV_012 | 4CUV | 0.0000 | 2 | 1 | G | 542 | C | 543 | C | 544 | G | 547 | G | 548 | U | 549 | ncWW | ncWW | ncWW | ncSW |
| 3 | HL_2AW7_012 | 2AW7 | 0.7036 | 3 | A | G | 462 | U | 463 | U | 464 | A | 468 | C | 469 | C | 470 | cWW | |||
| 4 | HL_2QBG_009 | 2QBG | 0.8893 | 0 | B | C | 225 | A | 226 | A | 227 | C | 228 | C | 229 | G | 230 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAUA | 1 |
| GCCUCGGU | 1 |
| GUUAAUACC | 1 |
| CAACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAU | 1 |
| CCUCGG | 1 |
| UUAAUAC | 1 |
| AACC | 1 |
Release history
| Release | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|
| Date | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_79956.2 | Only in the parent motif |
|---|---|---|---|
| HL_79956.1 Compare | HL_2AW7_012, HL_2QBG_009, HL_1VW3_056 | HL_4CUV_012 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.54 | Avg 0.60 | Max 0.95
Coloring options: