Motif HL_79956.1 Version HL_79956.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_056 | 1VW3 | 0.8480 | 0 | A | U | 3002 | U | 3003 | A | 3004 | A | 3005 | U | 3006 | A | 3007 | cWW | ncwW |
| 2 | HL_2AW7_012 | 2AW7 | 0.0000 | 3 | A | G | 462 | U | 463 | U | 464 | A | 468 | C | 469 | C | 470 | cWW | |
| 3 | HL_2QBG_009 | 2QBG | 0.8732 | 0 | B | C | 225 | A | 226 | A | 227 | C | 228 | C | 229 | G | 230 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAUA | 1 |
| GUUAAUACC | 1 |
| CAACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAU | 1 |
| UUAAUAC | 1 |
| AACC | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_79956.1 | Only in the parent motif |
|---|---|---|---|
| HL_30128.1 Compare | HL_2AW7_012 | HL_2QBG_009, HL_1VW3_056 | |
| HL_48116.2 Compare | HL_2QBG_009 | HL_2AW7_012, HL_1VW3_056 | HL_1Y0Q_006, HL_4IOA_016, HL_3DIR_004 |
Children motifs
| Child motif | Common motif instances | Only in HL_79956.1 | Only in the child motif |
|---|---|---|---|
| HL_79956.2 Compare | HL_2AW7_012, HL_2QBG_009, HL_1VW3_056 | HL_4CUV_012 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.85 | Avg 0.59 | Max 0.95
Coloring options: