#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 51-5
1 HL_1VWW_0321VWW0.32777528S ribosomal RNAA2420C2422A2423G2424U2426cWW
2 HL_4NVV_0364NVV0.25062A23S Ribosomal RNAG1538A1540A1541A1542C1544cWW
3 HL_4A1B_0314A1B0.27582126S RRNAA1532C1534A1535A1536U1538cWW
4 HL_3U5H_0323U5H0.23442525S rRNAA1506C1508A1509G1510U1512cWW
5 HL_4CUV_0324CUV0.20082125S RRNAA1506C1508A1509G1510U1512cWW
6 HL_4IOA_0324IOA0.00002X LSU rRNAG1337U1339C1340G1341C1343cWW
7 HL_4NVV_0324NVV0.08472A23S Ribosomal RNAG1370U1372C1373G1374C1376cWW
8 HL_1S72_0351S720.24642Pseudoknot geometry with 3' bulge (H)0 LSU rRNAG1430U1432G1433A1434C1436cWW
9 HL_2QBG_0352QBG0.28202B23S rRNAG1324U1326A1327A1328C1330cWW
10 HL_4IOA_0404IOA0.60171X LSU rRNAU1647C1648A1649A1650G1652cWW
11 HL_4NVV_0394NVV0.65331A23S Ribosomal RNAC1677A1678A1679G1680G1682cWW

3D structures

Complete motif including flanking bases
SequenceCounts
AGCAGUU2
GGUCGUC2
GGUUCAGAUCCC1
GCAAAUC1
AGCAAUU1
GCUGAUC1
GUUAAUC1
UCAAUG1
CAAGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GCAGU2
GUCGU2
GUUCAGAUCC1
CAAAU1
GCAAU1
CUGAU1
UUAAU1
CAAU1
AAGA1

Release history

Release1.16
Date2014-07-26
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in HL_80459.6Only in the parent motif
HL_80459.5
Compare
HL_4NVV_036, HL_3U5H_032, HL_1S72_035, HL_2QBG_035, HL_4NVV_032, HL_4CUV_032, HL_4A1B_031, HL_4NVV_039, HL_4IOA_032, HL_4IOA_040HL_1VWW_032

Children motifs

Child motifCommon motif instancesOnly in HL_80459.6Only in the child motif
HL_80459.7
Compare
HL_4IOA_040, HL_3U5H_032, HL_1S72_035, HL_2QBG_035, HL_4CUV_032, HL_4A1B_031, HL_4IOA_032, HL_1VWW_032HL_4NVV_036, HL_4NVV_032, HL_4NVV_039HL_4QCN_032, HL_4QCN_039, HL_4QCN_036
Annotations
  • (10)
  • Pseudoknot geometry with 3' bulge (H) (1)
  • Basepair signature
    cWW-R-R
    Heat map statistics
    Min 0.08 | Avg 0.36 | Max 0.76
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