Motif HL_80492.2 Version HL_80492.2 of this group appears in releases 0.3 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4AQ7_001 | 4AQ7 | 0.1083 | 5 | tRNA D-loop (H) | B | tRNA | G | 12 | G | 13 | A | 14 | A | 15 | A | 20|||A | G | 21 | A | 22 | C | 23 | cWW | cWS | tSH | cWS |
| 2 | HL_2BTE_001 | 2BTE | 0.0000 | 5 | tRNA D-loop | B | tRNA | G | 12 | G | 13 | A | 14 | A | 15 | A | 20|||A | G | 21 | A | 22 | C | 23 | cWW | cWS | tSH | cWS |
| 3 | HL_2BTE_005 | 2BTE | 0.0948 | 5 | tRNA D-loop (H) | E | tRNA | G | 12 | G | 13 | A | 14 | A | 15 | A | 20|||A | G | 21 | A | 22 | C | 23 | cWW | cWS | tSH | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAUGGGUAGAC | 2 |
| GGAAUCGGUAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAUGGGUAGA | 2 |
| GAAUCGGUAGA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_80492.2 | Only in the parent motif |
|---|---|---|---|
| HL_80492.1 Compare | HL_2BTE_001, HL_2BTE_005 | HL_4AQ7_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (H) (2)
- tRNA D-loop (1)
- Basepair signature
- cWW-tSH-cWS-cWS-R
- Heat map statistics
- Min 0.09 | Avg 0.08 | Max 0.15
Coloring options: