Motif HL_80583.1 Version HL_80583.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2CV1_005 | 2CV1 | 1.0639 | 1 | D | tRNA | C | 531 | C | 532 | U | 533 | C | 534 | U | 535 | C | 536 | A | 538 | G | 539 | cWW | ncWW | |
| 2 | HL_1J2B_003 | 1J2B | 0.7889 | 1 | D | tRNA(Val) | C | 932 | C | 933 | U | 934 | U | 935 | A | 936 | C | 937 | A | 939 | G | 940 | cWW | ncWW | |
| 3 | HL_2AZX_002 | 2AZX | 0.8509 | 1 | C | 72-MER | A | 531 | C | 532 | U | 533 | C | 534 | C | 535 | A | 536 | A | 538 | U | 539 | cWW | ncWW | |
| 4 | HL_2AZX_005 | 2AZX | 0.8017 | 1 | tRNA anticodon loop | D | 72-MER | A | 531 | C | 532 | U | 533 | C | 534 | C | 535 | A | 536 | A | 538 | U | 539 | cWW | |
| 5 | HL_2AKE_002 | 2AKE | 0.8121 | 1 | tRNA anticodon loop | B | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | C | 35 | A | 36 | A | 38 | U | 39 | cWW | |
| 6 | HL_3L0U_002 | 3L0U | 0.9026 | 1 | tRNA anticodon loop (H) | A | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 38 | U | 39 | cWW | |
| 7 | HL_1EIY_002 | 1EIY | 0.9050 | 1 | tRNA anticodon loop (H) | C | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 38 | U | 39 | cWW | |
| 8 | HL_2CV1_002 | 2CV1 | 0.8943 | 1 | C | tRNA | C | 531 | C | 532 | U | 533 | C | 534 | U | 535 | C | 536 | A | 538 | G | 539 | cWW | ncWW | |
| 9 | HL_1J1U_002 | 1J1U | 0.8352 | 1 | tRNA anticodon loop | B | tRNA(Tyr) | A | 532 | C | 533 | U | 534 | G | 535 | U | 536 | A | 537 | A | 539 | U | 540 | cWW | ncWW |
| 10 | HL_3ADC_006 | 3ADC | 0.0000 | 1 | D | Selenocysteine transfer RNA | A | 31 | C | 32 | U | 33 | U | 34 | C | 35 | A | 36 | A | 38 | U | 39 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUCCAGAU | 3 |
| CCUCUCAAG | 2 |
| CCUUACGAG | 1 |
| AUUGAAAAU | 1 |
| ACUGAAAAU | 1 |
| ACUGUAGAU | 1 |
| ACUUCAGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCCAGA | 3 |
| CUCUCAA | 2 |
| CUUACGA | 1 |
| UUGAAAA | 1 |
| CUGAAAA | 1 |
| CUGUAGA | 1 |
| CUUCAGA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_80583.1 | Only in the child motif |
|---|---|---|---|
| HL_74465.1 Compare | HL_2AZX_002, HL_3L0U_002, HL_2AKE_002, HL_1J1U_002, HL_2CV1_005, HL_1EIY_002, HL_1J2B_003 | HL_3ADC_006, HL_2AZX_005, HL_2CV1_002 | HL_2ZNI_002, HL_1J2B_001, HL_3TUP_002, HL_1U0B_002 |
- Annotations
-
- (5)
- tRNA anticodon loop (3)
- tRNA anticodon loop (H) (2)
- Basepair signature
- Heat map statistics
- Min 0.05 | Avg 0.58 | Max 1.06
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