Motif HL_74465.1 Version HL_74465.1 of this group appears in releases 0.3 to 0.8

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9	1-9	2-8
1	HL_1J2B_003	1J2B	0.5864	0		D	tRNA	C	932	C	933	U	934	U	935	A	936	C	937	G	938	A	939	G	940	cWW	ncWW
2	HL_1J2B_001	1J2B	0.4746	0		C	tRNA	C	932	C	933	U	934	U	935	A	936	C	937	G	938	A	939	G	940	cWW	cWW
3	HL_2AKE_002	2AKE	0.3913	0	tRNA anticodon loop	B	tRNA	A	31	C	32	U	33	C	34	C	35	A	36	G	37	A	38	U	39	cWW
4	HL_2CV1_005	2CV1	0.3526	0		D	tRNA	C	531	C	532	U	533	C	534	U	535	C	536	A	537	A	538	G	539	cWW	ncWW
5	HL_2AZX_002	2AZX	0.0000	0		C	tRNA	A	531	C	532	U	533	C	534	C	535	A	536	G	537	A	538	U	539	cWW	ncWW
6	HL_3L0U_002	3L0U	0.2847	0	tRNA anticodon loop (H)	A	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
7	HL_1U0B_002	1U0B	0.2765	0	tRNA anticodon loop	A	tRNA	A	31	U	32	U	33	G	34	C	35	A	36	A	37	A	38	U	39	cWW
8	HL_3TUP_002	3TUP	0.3542	0	tRNA anticodon loop	T	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
9	HL_2ZNI_002	2ZNI	0.3885	0	tRNA anticodon loop	C	bacterial tRNA	A	31	C	32	U	33	C	34	U	35	A	36	A	37	A	38	U	39	cWW	cWW
10	HL_1EIY_002	1EIY	0.6415	0	tRNA anticodon loop (H)	C	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
11	HL_1J1U_002	1J1U	0.5762	0	tRNA anticodon loop	B	tRNA	A	532	C	533	U	534	G	535	U	536	A	537	G	538	A	539	U	540	cWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCUUACGAG	2
ACUCCAGAU	2
ACUGAAAAU	2
CCUCUCAAG	1
AUUGAAAAU	1
AUUGCAAAU	1
ACUCUAAAU	1
ACUGUAGAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUUACGA	2
CUCCAGA	2
CUGAAAA	2
CUCUCAA	1
UUGAAAA	1
UUGCAAA	1
CUCUAAA	1
CUGUAGA	1

Release history

Release	0.3	0.4	0.5	0.6	0.7	0.8
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17
Status	> 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in HL_74465.1	Only in the parent motif
HL_80583.1 Compare	HL_2AZX_002, HL_3L0U_002, HL_2AKE_002, HL_1J1U_002, HL_2CV1_005, HL_1EIY_002, HL_1J2B_003	HL_2ZNI_002, HL_1J2B_001, HL_3TUP_002, HL_1U0B_002	HL_3ADC_006, HL_2AZX_005, HL_2CV1_002
HL_50137.1 Compare	HL_1U0B_002	HL_2AZX_002, HL_3L0U_002, HL_2AKE_002, HL_1J1U_002, HL_3TUP_002, HL_2ZNI_002, HL_2CV1_005, HL_1EIY_002, HL_1J2B_001, HL_1J2B_003
HL_62044.1 Compare	HL_2ZNI_002	HL_2AZX_002, HL_1U0B_002, HL_2AKE_002, HL_3L0U_002, HL_1J1U_002, HL_3TUP_002, HL_2CV1_005, HL_1EIY_002, HL_1J2B_001, HL_1J2B_003	HL_2JLT_001, HL_3B31_001
HL_05139.1 Compare	HL_1J2B_001	HL_2AZX_002, HL_1U0B_002, HL_2AKE_002, HL_3L0U_002, HL_1J1U_002, HL_3TUP_002, HL_2ZNI_002, HL_2CV1_005, HL_1EIY_002, HL_1J2B_003	HL_3O30_002

Children motifs

Child motif	Common motif instances	Only in HL_74465.1	Only in the child motif
HL_74465.2 Compare	HL_2AZX_002, HL_1U0B_002, HL_2AKE_002, HL_3L0U_002, HL_1J1U_002, HL_3TUP_002, HL_2ZNI_002, HL_2CV1_005, HL_1EIY_002, HL_1J2B_001, HL_1J2B_003		HL_3W3S_002

Annotations: tRNA anticodon loop (5)
(4)
tRNA anticodon loop (H) (2)
Basepair signature: cWW-cWW-R-tSH-R-R
Heat map statistics: Min 0.18 | Avg 0.51 | Max 0.96

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Coloring options: Nucleotide numbers

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