Motif HL_80599.2 Version HL_80599.2 of this group appears in releases 3.95 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1J2B_001 | 1J2B | 0.8714 | 0 | C | tRNA(Val) | C | 932 | C | 933 | U | 934 | U | 935 | A | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | cWW |
| 2 | HL_8P9A_169 | 8P9A | 0.0000 | 0 | AR | LSU rRNA | U | 2724 | U | 2725 | C | 2726 | A | 2727 | G | 2728 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | |
| 3 | HL_8CRE_057 | 8CRE | 0.0714 | 0 | 1 | LSU rRNA | U | 2696 | U | 2697 | C | 2698 | A | 2699 | G | 2700 | U | 2701 | G | 2702 | U | 2703 | G | 2704 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCAGUGUG | 2 |
| CCUUACGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGUGU | 2 |
| CUUACGA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.41 | Max 0.88
Coloring options: