Motif HL_81439.4 Version HL_81439.4 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4C9D_002 | 4C9D | 0.7475 | 0 | D | R3 REPEAT RNA CLEAVAGE PRODUCT | C | 21 | G | 22 | U | 23 | A | 24 | G | 25 | ncWW | ||
| 2 | HL_3IGI_004 | 3IGI | 0.0000 | 2 | A | Group IIC intron | G | 135 | G | 136 | C | 139 | A | 140 | C | 141 | cWW | ntSH | |
| 3 | HL_3OXE_002 | 3OXE | 0.4145 | 1 | A | domain II of glycine riboswitch | G | 49 | G | 50 | A | 52 | A | 53 | C | 54 | cWW | ntSH | |
| 4 | HL_5J7L_179 | 5J7L | 0.4437 | 1 | DA | LSU rRNA | C | 1806 | G | 1807 | A | 1809 | A | 1810 | G | 1811 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAG | 1 |
| GGAACAC | 1 |
| GGAAAC | 1 |
| CGAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 2 |
| GUA | 1 |
| GAACA | 1 |
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