Motif HL_81742.1 Version HL_81742.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3D2V_002 | 3D2V | 0.1861 | 4 | T-loop related | A | TPP riboswitch (THI element) | G | 54 | G | 55 | U | 56 | C | 61 | cWW |
| 2 | HL_7TZS_002 | 7TZS | 0.2333 | 4 | T-loop related | X | TPP riboswitch (THI element) | G | 66 | A | 67 | U | 68 | C | 73 | cWW |
| 3 | HL_3K0J_002 | 3K0J | 0.1663 | 4 | T-loop related | E | RNA (87-MER) | G | 66 | A | 67 | U | 68 | C | 73 | cWW |
| 4 | HL_5UD5_001 | 5UD5 | 0.0000 | 3 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | U | 15 | G | 21 | cWW |
| 5 | HL_3SKL_007 | 3SKL | 0.2809 | 2 | B | RNA (66-MER) | A | 66 | C | 67 | C | 68 | U | 71 | ncWW | |
| 6 | HL_3SKI_003 | 3SKI | 0.2584 | 2 | A | RNA (68-MER) | A | 67 | C | 68 | C | 69 | U | 72 | cWW | |
| 7 | HL_8KAH_003 | 8KAH | 0.3278 | 3 | I | tracrRNA | C | 86 | G | 87 | A | 88 | G | 92 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAAUGC | 2 |
| ACCUAU | 2 |
| GGUAAUGC | 1 |
| CAUGUAG | 1 |
| CGAGUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAAUG | 2 |
| CCUA | 2 |
| GUAAUG | 1 |
| AUGUA | 1 |
| GAGUC | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- T-loop related (3)
- (3)
- tRNA D-loop (1)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.11 | Avg 0.25 | Max 0.51
Coloring options: