Motif HL_82049.1 Version HL_82049.1 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VWW_009 | 1VWW | 0.0000 | -5 | 5 | 28S ribosomal RNA | U | 313 | G | 314 | U | 316 | A | 317 | A | 318 | A | 319 | C | 320 | U | 321 | C | 322 | C | 323 | A | 324 | cWW |
| 2 | HL_4IOA_002 | 4IOA | 0.9372 | 0 | X | LSU rRNA | C | 85 | U | 86 | G | 87 | G | 88 | A | 89 | G | 90 | A | 91 | U | 92 | A | 93 | C | 94 | G | 95 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAG | 1 |
| CUGGAGAUACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA | 1 |
| UGGAGAUAC | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_82049.1 | Only in the parent motif |
|---|---|---|---|
| HL_73465.1 Compare | HL_4IOA_002 | HL_1VWW_009 |
Children motifs
| Child motif | Common motif instances | Only in HL_82049.1 | Only in the child motif |
|---|---|---|---|
| HL_64371.4 Compare | HL_1VWW_009 | HL_4IOA_002 | HL_3DHS_005, HL_3IVK_006 |
| HL_21839.1 Compare | HL_4IOA_002 | HL_1VWW_009 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: