Motif HL_64371.4 Version HL_64371.4 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3IVK_006 | 3IVK | 0.6010 | 1 | C | class I ligase product | G | 1 | G | 2 | A | 3 | C | 5||A | A | 6 | C | 7 | U | 8 | A | 9 | U | 10 | A | 11 | C | 12 | cWW | tSH |
| 2 | HL_3DHS_005 | 3DHS | 0.0000 | 1 | A | RNase P RNA | C | 313 | G | 314 | G | 315 | G | 317 | C | 318 | A | 319 | U | 320 | G | 321 | C | 322 | A | 323 | G | 324 | cWW | ntSH |
| 3 | HL_1VWW_009 | 1VWW | 0.7348 | -5 | 5 | 28S ribosomal RNA | U | 313 | G | 314 | G | 315 | A | 317 | A | 318 | A | 319 | C | 320 | U | 321 | C | 322 | C | 323 | A | 324 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAACACUAUAC | 1 |
| CGGCGCAUGCAG | 1 |
| CGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAACACUAUA | 1 |
| GGCGCAUGCA | 1 |
| GUAA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-06 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_64371.4 | Only in the parent motif |
|---|---|---|---|
| HL_64371.3 Compare | HL_3DHS_005, HL_3IVK_006 | HL_1VWW_009 | HL_2A64_006 |
| HL_82049.1 Compare | HL_1VWW_009 | HL_3DHS_005, HL_3IVK_006 | HL_4IOA_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_64371.4 | Only in the child motif |
|---|---|---|---|
| HL_64371.5 Compare | HL_3DHS_005, HL_3IVK_006 | HL_1VWW_009 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.60 | Avg 0.52 | Max 0.98
Coloring options: