Motif HL_82098.1 Version HL_82098.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-10 | 1-11 | 2-10 | 3-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4W21_050 | 4W21 | 0.7892 | 0 | 5 | A | 3795 | U | 3796 | C | 3797 | U | 3798 | A | 3799 | A | 3800 | U | 3801 | U | 3802 | A | 3803 | G | 3804 | U | 3805 | ncWW | |||
| 2 | HL_3J7A_037 | 3J7A | 0.0000 | 0 | 7 | G | 50 | U | 51 | G | 52 | A | 53 | G | 54 | U | 55 | U | 56 | C | 57 | G | 58 | A | 59 | U | 60 | cWW | cWW | ||
| 3 | HL_1P6V_002 | 1P6V | 0.5337 | 0 | B | G | 44 | G | 45 | U | 46 | U | 47 | C | 48 | G | 49 | A | 50 | U | 51 | U | 52 | C | 53 | C | 54 | cWW | cWW | ntWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUCUAAUUAGU | 1 |
| GUGAGUUCGAU | 1 |
| GGUUCGAUUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCUAAUUAG | 1 |
| UGAGUUCGA | 1 |
| GUUCGAUUC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_82098.1 | Only in the parent motif |
|---|---|---|---|
| HL_95822.1 Compare | HL_3J7A_037 | HL_1P6V_002, HL_4W21_050 | |
| HL_94212.1 Compare | HL_1P6V_002 | HL_3J7A_037, HL_4W21_050 | HL_1VWW_005 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.53 | Avg 0.48 | Max 0.84
Coloring options: