HL_4W21_050

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUCUAAUUAGU

Length

11 nucleotides

Bulged bases

4W21|1|5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82098.1

Basepair signature

cWW-R-R-R-R-R-R-R-R

Number of instances in this motif group

3

Unit IDs

4W21|1|5|A|3795
4W21|1|5|U|3796
4W21|1|5|C|3797
4W21|1|5|U|3798
4W21|1|5|A|3799
4W21|1|5|A|3800
4W21|1|5|U|3801
4W21|1|5|U|3802
4W21|1|5|A|3803
4W21|1|5|G|3804
4W21|1|5|U|3805

Current chains

Chain 5

28S ribosomal RNA

Nearby chains