Motif HL_82382.1 Version HL_82382.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VWW_017 | 1VWW | 0.0000 | 1 | 5 | 28S ribosomal RNA | C | 1436 | C | 1437 | U | 1438 | U | 1440 | C | 1441 | C | 1442 | A | 1443 | G | 1444 | U | 1445 | C | 1446 | C | 1447 | G | 1448 | cWW | |||
| 2 | HL_4LVZ_001 | 4LVZ | 1.0043 | 1 | A | THF riboswitch | A | 33 | A | 34 | U | 35 | G | 37 | G | 38 | A | 39 | U | 40 | G | 41 | U | 42 | C | 43 | G | 44 | U | 45 | cWW | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUCUCCAGUCCG | 1 |
| AAUGGGAUGUCGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCUCCAGUCC | 1 |
| AUGGGAUGUCG | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_82382.1 | Only in the parent motif |
|---|---|---|---|
| HL_20920.1 Compare | HL_4LVZ_001 | HL_1VWW_017 |
Children motifs
| Child motif | Common motif instances | Only in HL_82382.1 | Only in the child motif |
|---|---|---|---|
| HL_45343.1 Compare | HL_4LVZ_001 | HL_1VWW_017 | HL_4W21_017 |
- Annotations
- Basepair signature
- cWW-cWW-R-tWH-R-R-R-R-R
- Heat map statistics
- Min 1.00 | Avg 0.50 | Max 1.00
Coloring options: