HL_4W21_017

3D structure

PDB id

4W21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the large ribosomal subunit RNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

4W21|1|5|C|1439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45343.1

Basepair signature

cWW-cWW-tWH-R-R-R-R-R

Number of instances in this motif group

2

Unit IDs

4W21|1|5|C|1436
4W21|1|5|C|1437
4W21|1|5|U|1438
4W21|1|5|C|1439
4W21|1|5|U|1440
4W21|1|5|C|1441
4W21|1|5|C|1442
4W21|1|5|A|1443
4W21|1|5|G|1444
4W21|1|5|U|1445
4W21|1|5|C|1446
4W21|1|5|C|1447
4W21|1|5|G|1448

Current chains

Chain 5

28S ribosomal RNA

Nearby chains