Motif HL_45343.1 Version HL_45343.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-8 | 3-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4LVZ_001 | 4LVZ | 0.0000 | 2 | A | THF riboswitch | A | 33 | A | 34 | U | 35 | G | 37 | G | 38 | A | 39 | U | 40 | G | 41 | U | 42 | G | 44 | U | 45 | cWW | cWW | tWH | |
| 2 | HL_4W21_017 | 4W21 | 0.6621 | 2 | 5 | 28S ribosomal RNA | C | 1436 | C | 1437 | U | 1438 | U | 1440 | C | 1441 | C | 1442 | A | 1443 | G | 1444 | U | 1445 | C | 1447 | G | 1448 | cWW | ncBW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUGGGAUGUCGU | 1 |
| CCUCUCCAGUCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGGGAUGUCG | 1 |
| CUCUCCAGUCC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_45343.1 | Only in the parent motif |
|---|---|---|---|
| HL_82382.1 Compare | HL_4LVZ_001 | HL_4W21_017 | HL_1VWW_017 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-tWH-R-R-R-R-R
- Heat map statistics
- Min 0.66 | Avg 0.33 | Max 0.66
Coloring options: