Motif HL_82667.2 Version HL_82667.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-5
1	HL_3AMU_001	3AMU	0.6931	6	tRNA D-loop	B	tRNA	U	13	A	14	G	15	C	16	A	21\|\|\|C	G	22	cWW	ncWS
2	HL_1GAX_004	1GAX	0.3725	3	tRNA D-loop	D	TRNA(VAL)	C	913	A	914	G	915	C	916	A	920	G	921	cWW
3	HL_5WWT_001	5WWT	0.0000	3	tRNA D-loop	C	tRNA	C	13	A	14	G	15	G	16	A	21	G	22	cWW
4	HL_3TUP_001	3TUP	0.3660	4	tRNA D-loop	T	tRNA	C	13	A	14	G	15	U	16	A	21	G	22	cWW	ncWS
5	HL_3EPH_001	3EPH	0.3695	3	tRNA D-loop	E	tRNA	C	13	A	14	G	15	U	16	A	21	G	22	cWW	cWS

3D structures

Complete motif including flanking bases

Sequence	Counts
UAGCCAGGUCAG	1
CAGCGGAAG	1
CAGGGGUAG	1
CAGUUGGUAG	1
CAGUGGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGCCAGGUCA	1
AGCGGAA	1
AGGGGUA	1
AGUUGGUA	1
AGUGGUA	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tRNA D-loop (5)
Basepair signature: cWW-cWS-R-R
Heat map statistics: Min 0.19 | Avg 0.44 | Max 0.90

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