Motif HL_82678.1 Version HL_82678.1 of this group appears in releases 3.2 to 3.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_216 | 4V88 | 0.8323 | 0 | A6 | SSU rRNA | C | 1359 | A | 1360 | U | 1361 | U | 1362 | U | 1363 | G | 1364 | cWW | |
| 2 | HL_2Y9H_007 | 2Y9H | 0.8350 | 0 | N | RNA (19-mer) | C | 11 | G | 12 | C | 13 | G | 14 | U | 15 | G | 16 | cWW | |
| 3 | HL_5AMQ_001 | 5AMQ | 0.7636 | 1 | C | RNA | U | 3 | A | 4 | G | 5 | G | 7 | U | 8 | A | 9 | cWW | |
| 4 | HL_2QUS_003 | 2QUS | 0.0000 | 0 | A | Hammerhead ribozyme | C | 42 | G | 43 | U | 44 | G | 45 | A | 46 | G | 47 | cWW | |
| 5 | HL_2QUW_003 | 2QUW | 0.0713 | 0 | B | Hammerhead ribozyme, cleaved fragment | C | 42 | G | 43 | U | 44 | G | 45 | A | 46 | G | 47 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGAG | 2 |
| CAUUUG | 1 |
| CGCGUG | 1 |
| UAGUGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGA | 2 |
| AUUU | 1 |
| GCGU | 1 |
| AGUGU | 1 |
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