Motif HL_82706.1 Version HL_82706.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4BTS_140 | 4BTS | 0.7557 | 0 | DA | SSU rRNA | C | 1367 | A | 1368 | A | 1369 | U | 1370 | A | 1371 | A | 1372 | G | 1373 | cWW | ntSH | |
| 2 | HL_5A2Q_027 | 5A2Q | 0.4700 | 0 | GNRA (H) | 2 | SSU rRNA | C | 1460 | G | 1461 | U | 1462 | U | 1463 | C | 1464 | A | 1465 | G | 1466 | cWW | ntSH |
| 3 | HL_3J7P_003 | 3J7P | 0.3097 | 0 | 5 | LSU rRNA | C | 89 | G | 90 | G | 91 | C | 92 | G | 93 | A | 94 | G | 95 | ncWW | tSH | |
| 4 | HL_3J7Y_002 | 3J7Y | 0.2845 | 0 | A | LSU rRNA | A | 1746 | G | 1747 | G | 1748 | C | 1749 | G | 1750 | A | 1751 | U | 1752 | cWW | tSH | |
| 5 | HL_4V19_002 | 4V19 | 0.2129 | 0 | A | LSU rRNA | A | 80 | G | 81 | G | 82 | A | 83 | G | 84 | A | 85 | U | 86 | cWW | ntSH | |
| 6 | HL_3J9W_043 | 3J9W | 0.1963 | 0 | BA | LSU rRNA | C | 249 | G | 250 | G | 251 | C | 252 | G | 253 | A | 254 | G | 255 | cWW | tSH | |
| 7 | HL_5J7L_141 | 5J7L | 0.1102 | 0 | DA | LSU rRNA | C | 246 | G | 247 | G | 248 | C | 249 | G | 250 | A | 251 | G | 252 | cWW | ntSH | |
| 8 | HL_3J79_003 | 3J79 | 0.0000 | 0 | A | LSU rRNA | C | 90 | G | 91 | G | 92 | C | 93 | G | 94 | A | 95 | G | 96 | cWW | tSH | |
| 9 | HL_4V91_003 | 4V91 | 0.0855 | 0 | 1 | LSU rRNA | C | 90 | G | 91 | G | 92 | C | 93 | G | 94 | A | 95 | G | 96 | cWW | tSH | |
| 10 | HL_4IOA_008 | 4IOA | 0.1285 | 0 | X | LSU rRNA | C | 223 | G | 224 | G | 225 | C | 226 | G | 227 | A | 228 | G | 229 | cWW | tSH | |
| 11 | HL_5FDU_007 | 5FDU | 0.1076 | 0 | 1A | LSU rRNA | C | 235 | G | 236 | G | 237 | C | 238 | G | 239 | A | 240 | G | 241 | cWW | tSH | |
| 12 | HL_4V88_116 | 4V88 | 0.1257 | 0 | A5 | LSU rRNA | C | 90 | G | 91 | G | 92 | C | 93 | G | 94 | A | 95 | G | 96 | cWW | tSH | |
| 13 | HL_4V8P_163 | 4V8P | 0.1085 | 0 | F1 | LSU rRNA | U | 88 | G | 89 | G | 90 | C | 91 | G | 92 | A | 93 | A | 94 | cWW | tSH | |
| 14 | HL_5AJ0_003 | 5AJ0 | 0.1524 | 0 | A2 | LSU rRNA | C | 89 | G | 90 | G | 91 | C | 92 | G | 93 | A | 94 | G | 95 | cWW | tSH | |
| 15 | HL_4V9F_008 | 4V9F | 0.2300 | 0 | 0 | LSU rRNA | C | 217 | C | 218 | G | 219 | C | 220 | G | 221 | A | 222 | G | 223 | cWW | tSH | |
| 16 | HL_3JAM_031 | 3JAM | 0.5322 | 0 | GNRA (H) | 2 | SSU rRNA | U | 1394 | U | 1395 | U | 1396 | C | 1397 | A | 1398 | A | 1399 | G | 1400 | cWW | ntSH |
| 17 | HL_4V88_217 | 4V88 | 0.6228 | 0 | GNRA | A6 | SSU rRNA | U | 1396 | U | 1397 | U | 1398 | C | 1399 | A | 1400 | A | 1401 | G | 1402 | cWW | ntSH |
| 18 | HL_3J7A_028 | 3J7A | 0.5470 | 0 | GNRA (H) | A | SSU rRNA | U | 1642 | G | 1643 | U | 1644 | C | 1645 | U | 1646 | A | 1647 | A | 1648 | cWW | tSH |
| 19 | HL_3J7P_105 | 3J7P | 0.7053 | 0 | GNRA (H) | S2 | SSU rRNA | C | 1460 | G | 1461 | U | 1462 | U | 1463 | C | 1464 | A | 1465 | G | 1466 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGCGAG | 9 |
| CGUUCAG | 2 |
| UUUCAAG | 2 |
| CAAUAAG | 1 |
| AGGCGAU | 1 |
| AGGAGAU | 1 |
| UGGCGAA | 1 |
| CCGCGAG | 1 |
| UGUCUAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCGA | 11 |
| GUUCA | 2 |
| UUCAA | 2 |
| AAUAA | 1 |
| GGAGA | 1 |
| CGCGA | 1 |
| GUCUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (14)
- GNRA (H) (4)
- GNRA (1)
- Basepair signature
- cWW-tSH-R-R-R
- Heat map statistics
- Min 0.08 | Avg 0.42 | Max 0.82
Coloring options: