Motif HL_83765.2 Version HL_83765.2 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3O58_053 | 3O58 | 0.5099 | 1 | 1 | 25S ribosomal RNA | A | 2536 | U | 2537 | U | 2538 | A | 2540 | U | 2541 | U | 2542 | U | 2543 | cWW | ncWw | |
| 2 | HL_2D6F_002 | 2D6F | 0.0000 | 2 | E | tRNA | G | 931 | C | 932 | U | 933 | G | 936 | G | 937 | A | 938 | C | 939 | cWW | ncWW | |
| 3 | HL_3O58_038 | 3O58 | 0.4338 | 0 | 1 | 25S ribosomal RNA | G | 1719 | U | 1720 | U | 1721 | U | 1722 | A | 1723 | U | 1724 | C | 1725 | cWW | ||
| 4 | HL_2D6F_005 | 2D6F | 0.9157 | 2 | tRNA anticodon loop | F | tRNA | G | 931 | C | 932 | U | 933 | G | 936 | G | 937 | A | 938 | C | 939 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUUUGGAC | 2 |
| AUUCAUUU | 1 |
| GUUUAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUUGGA | 2 |
| UUCAUU | 1 |
| UUUAU | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_83765.2 | Only in the parent motif |
|---|---|---|---|
| HL_83765.1 Compare | HL_2D6F_002, HL_3O58_053, HL_3O58_038, HL_2D6F_005 | HL_3O58_070 |
Children motifs
| Child motif | Common motif instances | Only in HL_83765.2 | Only in the child motif |
|---|---|---|---|
| HL_66090.1 Compare | HL_2D6F_005 | HL_2D6F_002, HL_3O58_053, HL_3O58_038 |
- Annotations
-
- (3)
- tRNA anticodon loop (1)
- Basepair signature
- Heat map statistics
- Min 0.43 | Avg 0.56 | Max 0.96
Coloring options: