Motif HL_84417.1 Version HL_84417.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_140 | 5J7L | 0.8994 | 0 | DA | LSU rRNA | C | 225 | A | 226 | A | 227 | C | 228 | C | 229 | G | 230 | cWW | tSH |
| 2 | HL_5CZZ_002 | 5CZZ | 0.5980 | 1 | B | RNA (73-MER) | C | 59 | A | 60 | A | 61 | A | 62 | A | 63 | G | 65 | cWW | ncSW |
| 3 | HL_4WSB_001 | 4WSB | 0.0880 | 0 | V | Influenza A polymerase vRNA promoter 5' end | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | |
| 4 | HL_4WRT_001 | 4WRT | 0.0000 | 0 | V | Influenza virus polymerase vRNA promoter 5' end | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | ncSW |
| 5 | HL_5FMZ_002 | 5FMZ | 0.0633 | 0 | V | RNA (12-mer) | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | |
| 6 | HL_3DIR_004 | 3DIR | 0.8929 | 0 | A | RNA (174-MER) | G | 149 | G | 150 | U | 151 | C | 152 | U | 153 | C | 154 | cWW | |
| 7 | HL_5LJ3_003 | 5LJ3 | 0.9109 | 0 | Z | U2 snRNA | G | 1120 | U | 1121 | U | 1122 | C | 1123 | U | 1124 | U | 1125 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGUAA | 3 |
| CAACCG | 1 |
| CAAAAUG | 1 |
| GGUCUC | 1 |
| GUUCUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUA | 3 |
| AACC | 1 |
| AAAAU | 1 |
| GUCU | 1 |
| UUCU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cSW-R-R
- Heat map statistics
- Min 0.06 | Avg 0.62 | Max 0.98
Coloring options: