Motif HL_84632.1 Version HL_84632.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_3EGZ_001 | 3EGZ | 0.9564 | 5 | B | Tetracycline aptamer and artificial riboswitch | G | 12 | A | 13 | A | 14 | G | 15 | A | 16 | A | 22 | C | 23 | C | 24 | cWW | ncWWa | |
2 | HL_6ZDU_001 | 6ZDU | 0.4719 | 4 | C | Chains: C,D | C | 1271 | C | 1272 | C | 1273 | G | 1274 | A | 1275 | G | 1279 | G | 1281 | G | 1282 | ncWW | ncWW | ncWH |
3 | HL_5EL4_250 | 5EL4 | 0.0000 | 5 | 3L | tRNA | A | 51 | G | 52 | G | 53 | U | 54 | U | 55 | C | 61 | C | 62 | U | 63 | ncWW | ncWW | |
4 | HL_5E81_248 | 5E81 | 0.2922 | 5 | 3L | tRNA | A | 51 | G | 52 | G | 53 | U | 54 | U | 55 | C | 61 | C | 62 | U | 63 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AGGUUCGAAUCCU | 2 |
GAAGAAUACGACC | 1 |
CCCGAAUUGUGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGUUCGAAUCC | 2 |
AAGAAUACGAC | 1 |
CCGAAUUGUG | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.29 | Avg 0.51 | Max 0.97
Coloring options: