Motif HL_85049.2 Version HL_85049.2 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_043 | 2ZJR | 0.8619 | 0 | X | LSU rRNA | C | 1731 | U | 1732 | U | 1733 | C | 1734 | G | 1735 | cWW | |
| 2 | HL_3OWZ_001 | 3OWZ | 0.0000 | 3 | A | Domain II of glycine riboswitch | G | 17 | U | 20 | A | 21 | U | 23 | C | 24 | cWW | |
| 3 | HL_1U6B_002 | 1U6B | 0.6771 | 1 | Pseudoknot geometry | B | 197-MER | C | 70 | C | 72 | C | 73 | C | 74 | G | 75 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUCG | 1 |
| GUUUAAUC | 1 |
| CGCCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUC | 1 |
| UUUAAU | 1 |
| GCCC | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_85049.2 | Only in the parent motif |
|---|---|---|---|
| HL_85049.1 Compare | HL_3OWZ_001, HL_2ZJR_043 | HL_1U6B_002 | |
| HL_26175.1 Compare | HL_1U6B_002 | HL_3OWZ_001, HL_2ZJR_043 | HL_2NR0_012, HL_3PYO_014, HL_2QBG_015, HL_1S72_053, HL_1WZ2_002, HL_2ZJR_013 |
Children motifs
| Child motif | Common motif instances | Only in HL_85049.2 | Only in the child motif |
|---|---|---|---|
| HL_16860.1 Compare | HL_3OWZ_001 | HL_1U6B_002, HL_2ZJR_043 | |
| HL_49267.1 Compare | HL_2ZJR_043 | HL_1U6B_002, HL_3OWZ_001 | HL_3QSY_002 |
| HL_28436.1 Compare | HL_1U6B_002 | HL_3OWZ_001, HL_2ZJR_043 | HL_2NR0_003, HL_2ZJR_037, HL_3OWZ_002, HL_2ZJR_063, HL_1S72_067, HL_2QBG_067, HL_4A1B_066, HL_3U5H_067 |
- Annotations
-
- (2)
- Pseudoknot geometry (1)
- Basepair signature
- Heat map statistics
- Min 0.68 | Avg 0.54 | Max 0.87
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