Motif HL_26175.1 Version HL_26175.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_013 | 2ZJR | 0.6544 | 5 | X | LSU rRNA | G | 423 | C | 429 | C | 430 | cWW | |
| 2 | HL_3PYO_014 | 3PYO | 0.7179 | 5 | A | LSU rRNA | G | 410 | C | 416 | C | 417 | cWW | |
| 3 | HL_1U6B_002 | 1U6B | 0.3946 | 3 | Pseudoknot geometry | B | 197-MER | C | 70 | C | 74 | G | 75 | cWW |
| 4 | HL_1S72_053 | 1S72 | 0.2272 | 1 | 0 | LSU rRNA | G | 2136 | A | 2238 | C | 2239 | cWW | |
| 5 | HL_2QBG_015 | 2QBG | 0.0000 | 5 | B | LSU rRNA | G | 410 | U | 416 | C | 417 | cWW | |
| 6 | HL_2NR0_012 | 2NR0 | 0.0969 | 0 | H | tRNA | C | 31 | U | 38 | G | 39 | ncWW | |
| 7 | HL_1WZ2_002 | 1WZ2 | 0.1995 | 6 | C | tRNA | A | 934 | A | 941 | U | 942 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGACCACC | 2 |
| CGCCCG | 1 |
| GGAC | 1 |
| GGACCAUC | 1 |
| CUG | 1 |
| ACUCAAGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACCAC | 2 |
| GCCC | 1 |
| GA | 1 |
| GACCAU | 1 |
| U | 1 |
| CUCAAGA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_26175.1 | Only in the child motif |
|---|---|---|---|
| HL_31541.1 Compare | HL_2QBG_015, HL_3PYO_014, HL_2ZJR_013, HL_1WZ2_002 | HL_2NR0_012, HL_1U6B_002, HL_1S72_053 | HL_1WZ2_006 |
| HL_85049.2 Compare | HL_1U6B_002 | HL_2NR0_012, HL_3PYO_014, HL_2QBG_015, HL_1S72_053, HL_1WZ2_002, HL_2ZJR_013 | HL_3OWZ_001, HL_2ZJR_043 |
- Annotations
-
- (6)
- Pseudoknot geometry (1)
- Basepair signature
- Heat map statistics
- Min 0.10 | Avg 0.39 | Max 0.74
Coloring options: