Motif HL_85352.1 Version HL_85352.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3O58_041 | 3O58 | 0.3490 | 3 | 1 | 25S ribosomal RNA | C | 1844 | G | 1845 | A | 1847 | C | 1849 | G | 1851 | cWW |
| 2 | HL_1S72_042 | 1S72 | 0.1645 | 3 | 0 | LSU rRNA | C | 1687 | G | 1688 | C | 1690 | C | 1692 | G | 1694 | cWW |
| 3 | HL_3PYO_040 | 3PYO | 0.0000 | 3 | A | 23S ribosomal RNA | C | 1612 | G | 1613 | C | 1615 | C | 1617 | G | 1619 | cWW |
| 4 | HL_2QBG_042 | 2QBG | 0.0974 | 3 | B | 23S rRNA | C | 1612 | G | 1613 | C | 1615 | C | 1617 | G | 1619 | cWW |
| 5 | HL_2ZJR_040 | 2ZJR | 0.2352 | 3 | X | LSU rRNA | C | 1628 | G | 1629 | C | 1631 | C | 1633 | G | 1635 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACACAG | 4 |
| CGCAGCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACACA | 4 |
| GCAGCA | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_85352.1 | Only in the parent motif |
|---|---|---|---|
| HL_51648.1 Compare | HL_3PYO_040, HL_2QBG_042, HL_2ZJR_040, HL_3O58_041 | HL_1S72_042 | HL_1S72_046, HL_2ZJR_044, HL_3PYO_044, HL_2QBG_046, HL_3IVK_002, HL_3IVK_007 |
| HL_91177.1 Compare | HL_1S72_042 | HL_3PYO_040, HL_2QBG_042, HL_2ZJR_040, HL_3O58_041 |
Children motifs
| Child motif | Common motif instances | Only in HL_85352.1 | Only in the child motif |
|---|---|---|---|
| HL_56824.1 Compare | HL_1S72_042, HL_2QBG_042, HL_2ZJR_040 | HL_3PYO_040, HL_3O58_041 | HL_1S72_046, HL_3V2F_038, HL_3V2F_042, HL_2ZJR_044, HL_4A1B_040, HL_3U5H_041, HL_2QBG_046 |
Coloring options: