Motif HL_56824.1 Version HL_56824.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_044 | 2ZJR | 0.7687 | 0 | X | LSU rRNA | C | 1743 | G | 1744 | C | 1745 | A | 1746 | G | 1747 | cWW |
| 2 | HL_2QBG_046 | 2QBG | 0.7093 | 0 | B | 23S rRNA | C | 1752 | G | 1753 | A | 1754 | A | 1755 | G | 1756 | cWW |
| 3 | HL_3V2F_042 | 3V2F | 0.7394 | 0 | A | 23S Ribosomal RNA | C | 1752 | G | 1753 | C | 1754 | A | 1755 | G | 1756 | cWW |
| 4 | HL_1S72_046 | 1S72 | 0.7609 | 0 | 0 | LSU rRNA | C | 1808 | G | 1809 | C | 1810 | A | 1811 | G | 1812 | cWW |
| 5 | HL_3U5H_041 | 3U5H | 0.1266 | 3 | 5 | 25S rRNA | C | 1844 | G | 1845 | A | 1847 | C | 1849 | G | 1851 | cWW |
| 6 | HL_4A1B_040 | 4A1B | 0.1086 | 3 | 1 | 26S RRNA | C | 1868 | G | 1869 | A | 1871 | C | 1873 | G | 1875 | cWW |
| 7 | HL_1S72_042 | 1S72 | 0.0000 | 3 | 0 | LSU rRNA | C | 1687 | G | 1688 | C | 1690 | C | 1692 | G | 1694 | cWW |
| 8 | HL_3V2F_038 | 3V2F | 0.1418 | 3 | A | 23S Ribosomal RNA | C | 1612 | G | 1613 | C | 1615 | C | 1617 | G | 1619 | cWW |
| 9 | HL_2QBG_042 | 2QBG | 0.1757 | 3 | B | 23S rRNA | C | 1612 | G | 1613 | C | 1615 | C | 1617 | G | 1619 | cWW |
| 10 | HL_2ZJR_040 | 2ZJR | 0.2139 | 3 | X | LSU rRNA | C | 1628 | G | 1629 | C | 1631 | C | 1633 | G | 1635 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACACAG | 4 |
| CGCAG | 3 |
| CGAAG | 1 |
| CGCAGCAG | 1 |
| CGCAUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACACA | 4 |
| GCA | 3 |
| GAA | 1 |
| GCAGCA | 1 |
| GCAUCA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_56824.1 | Only in the parent motif |
|---|---|---|---|
| HL_85352.1 Compare | HL_1S72_042, HL_2QBG_042, HL_2ZJR_040 | HL_1S72_046, HL_3V2F_038, HL_3V2F_042, HL_2ZJR_044, HL_4A1B_040, HL_3U5H_041, HL_2QBG_046 | HL_3PYO_040, HL_3O58_041 |
| HL_18082.1 Compare | HL_2ZJR_044, HL_1S72_046, HL_2QBG_046 | HL_1S72_042, HL_3V2F_038, HL_3V2F_042, HL_2ZJR_040, HL_2QBG_042, HL_4A1B_040, HL_3U5H_041 | HL_2ZJR_027, HL_2QBG_029, HL_3PYO_044, HL_1S72_029, HL_3PYO_028, HL_3IVK_002, HL_3IVK_007 |
Children motifs
| Child motif | Common motif instances | Only in HL_56824.1 | Only in the child motif |
|---|---|---|---|
| HL_56824.2 Compare | HL_1S72_042, HL_1S72_046, HL_3V2F_038, HL_3V2F_042, HL_2QBG_042, HL_2QBG_046, HL_3U5H_041, HL_4A1B_040 | HL_2ZJR_044, HL_2ZJR_040 | HL_4IOA_039, HL_4IOA_043 |
Coloring options: