Motif HL_85445.1 Version HL_85445.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7JRS_002 | 7JRS | 0.0000 | 2 | B | RNA 3D nanocage | G | 63 | A | 64 | C | 67 | A | 68 | G | 69 | G | 70 | C | 71 | A | 72 | C | 73 | cWW | ncwW |
| 2 | HL_3SUX_001 | 3SUX | 0.4669 | 1 | X | THF riboswitch | A | 38 | C | 39 | G | 41 | G | 42 | G | 43 | A | 44 | G | 45 | U | 46 | U | 47 | ncWW | ncWW |
| 3 | HL_6XKO_003 | 6XKO | 0.6239 | 1 | A | PreQ1-III riboswitch | G | 63 | C | 64 | G | 66 | G | 67 | C | 68 | G | 69 | G | 70 | U | 71 | C | 72 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGCAGGCAC | 1 |
| ACGGGGAGUU | 1 |
| GCUGGCGGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGCAGGCA | 1 |
| CGGGGAGU | 1 |
| CUGGCGGU | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.47 | Avg 0.36 | Max 0.62
Coloring options: