Motif HL_85987.1 Version HL_85987.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V8P_091 | 4V8P | 0.0000 | 2 | D1 | LSU rRNA | U | 277 | U | 278 | U | 279 | G | 280 | G | 281 | G | 282 | U | 285 | G | 286 | cWW | cwW |
| 2 | HL_4V9F_013 | 4V9F | 0.3970 | 2 | 0 | LSU rRNA | G | 390 | U | 391 | U | 392 | G | 393 | G | 394 | A | 395 | U | 398 | C | 399 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUGGGAUUG | 1 |
| GUUGGAUAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGGGAUU | 1 |
| UUGGAUAU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-R-R-R
- Heat map statistics
- Min 0.40 | Avg 0.20 | Max 0.40
Coloring options: