3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
UUUGGGAUUG
Length
10 nucleotides
Bulged bases
4V8P|1|D1|A|283, 4V8P|1|D1|U|284
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_85987.1
Basepair signature
cWW-cWW-R-R-R
Number of instances in this motif group
2

Unit IDs

4V8P|1|D1|U|277
4V8P|1|D1|U|278
4V8P|1|D1|U|279
4V8P|1|D1|G|280
4V8P|1|D1|G|281
4V8P|1|D1|G|282
4V8P|1|D1|A|283
4V8P|1|D1|U|284
4V8P|1|D1|U|285
4V8P|1|D1|G|286

Current chains

Chain D1
26S RRNA

Nearby chains

Chain CK
60S RIBOSOMAL PROTEIN L27A
Chain CL
RIBOSOMAL PROTEIN L15
Chain DC
60S RIBOSOMAL PROTEIN L36A
Chain DU
RPL13

Coloring options:

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