Motif HL_86115.1 Version HL_86115.1 of this group appears in releases 1.10 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4M4O_001 | 4M4O | 0.4934 | 1 | UNCG related | B | RNA (59-MER) | C | 32 | U | 33 | A | 35 | G | 36 | cWW | cWS |
| 2 | HL_4M6D_004 | 4M6D | 0.4901 | 1 | UNCG related | H | aptamer | C | 32 | U | 33 | A | 35 | G | 36 | cWW | cWS |
| 3 | HL_1GID_003 | 1GID | 0.0000 | 3 | A | P4-P6 RNA RIBOZYME DOMAIN | G | 234 | A | 235 | U | 239 | C | 240 | cWW | ncWW | |
| 4 | HL_1GID_006 | 1GID | 0.0096 | 3 | B | P4-P6 RNA RIBOZYME DOMAIN | G | 234 | A | 235 | U | 239 | C | 240 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAG | 2 |
| GAUCUUC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUA | 2 |
| AUCUU | 2 |
Release history
| Release | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
|---|---|---|---|---|---|---|
| Date | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_86115.1 | Only in the parent motif |
|---|---|---|---|
| HL_42687.4 Compare | HL_1GID_006, HL_1GID_003 | HL_4M6D_004, HL_4M4O_001 | HL_361D_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_86115.1 | Only in the child motif |
|---|---|---|---|
| HL_86115.2 Compare | HL_1GID_006, HL_4M6D_004, HL_1GID_003, HL_4M4O_001 | HL_1VWW_029 |
- Annotations
-
- (2)
- UNCG related (2)
- Basepair signature
- cWW-cWS
- Heat map statistics
- Min 0.01 | Avg 0.26 | Max 0.50
Coloring options: