Motif HL_86123.2 Version HL_86123.2 of this group appears in releases 0.3 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1FJG_029 | 1FJG | 0.0000 | 0 | T-loop with 3 stacked bulged bases (H) | A | SSU rRNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | C | 1320 | C | 1321 | C | 1322 | G | 1323 | cWW | tWH |
| 2 | HL_2AW7_029 | 2AW7 | 0.1790 | 0 | A | 16S ribosomal RNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | C | 1320 | U | 1321 | C | 1322 | G | 1323 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGCAACCCG | 1 |
| CUGCAACUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGCAACCC | 1 |
| UGCAACUC | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_86123.2 | Only in the parent motif |
|---|---|---|---|
| HL_86123.1 Compare | HL_1FJG_029, HL_2AW7_029 | HL_3EPH_003 |
Children motifs
This motif has no children motifs.- Annotations
-
- T-loop with 3 stacked bulged bases (H) (1)
- (1)
- Basepair signature
- cWW-R-R-R-tWH-R-R-R
- Heat map statistics
- Min 0.18 | Avg 0.09 | Max 0.18
Coloring options: