Motif HL_86123.1 Version HL_86123.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2AW7_029 | 2AW7 | 0.0000 | 1 | A | 16S ribosomal RNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | C | 1320 | U | 1321 | G | 1323 | cWW | tWH | |
| 2 | HL_3EPH_003 | 3EPH | 0.1906 | 0 | T-loop with 2 stacked bulged bases | E | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | C | 60 | C | 61 | cWW | tWH |
| 3 | HL_1FJG_029 | 1FJG | 0.6682 | 1 | T-loop with 3 stacked bulged bases (H) | A | SSU rRNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | C | 1320 | C | 1321 | G | 1323 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGCAACUCG | 1 |
| GUUCGAUCC | 1 |
| CUGCAACCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGCAACUC | 1 |
| UUCGAUC | 1 |
| UGCAACCC | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_86123.1 | Only in the child motif |
|---|---|---|---|
| HL_86123.2 Compare | HL_1FJG_029, HL_2AW7_029 | HL_3EPH_003 | |
| HL_72498.1 Compare | HL_3EPH_003 | HL_1FJG_029, HL_2AW7_029 | HL_4A1B_015, HL_3L0U_003, HL_2AZX_003, HL_3F4G_001, HL_3V2F_018, HL_4A1B_030, HL_3F4G_004, HL_3V2F_030, HL_2DU3_003, HL_3ADC_004, HL_2ZUF_003, HL_2DER_006, HL_3TUP_003, HL_2D6F_006, HL_3AMU_003, HL_2ZJR_017, HL_3AL0_003, HL_2ZM5_003, HL_1QU2_003, HL_3U5H_014, HL_2QBG_034, HL_1S72_034, HL_2CSX_003, HL_2ZJR_032, HL_2NR0_004, HL_3ADD_004, HL_3ICQ_005, HL_2ZZN_003, HL_2FK6_002, HL_3A2K_003, HL_2CV1_006, HL_3AM1_004, HL_1WZ2_008, HL_3OUY_001, HL_3U5H_031, HL_2NRE_003, HL_1J1U_003, HL_4AQ7_003, HL_3G78_001, HL_2ZZM_004, HL_2ZNI_003, HL_1J2B_004, HL_1J2B_002, HL_2QBG_019, HL_3RG5_004, HL_2DU6_003, HL_2DR8_001, HL_2BTE_008, HL_3Q1Q_011, HL_1GAX_006, HL_1QRS_003, HL_2AKE_003, HL_2BTE_004, HL_3OVA_001, HL_1U0B_003 |
- Annotations
-
- T-loop with 3 stacked bulged bases (H) (1)
- (1)
- T-loop with 2 stacked bulged bases (1)
- Basepair signature
- Heat map statistics
- Min 0.19 | Avg 0.33 | Max 0.67
Coloring options: