Motif HL_86332.1 Version HL_86332.1 of this group appears in releases 3.77 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-8	3-7	5-6
1	HL_4JXZ_001	4JXZ	0.5405	2	B	tRNA	C	912	A	913	A	914	G	915	G	919	U	920	A	921	A	922	G	923	cWW	tSH	cWS
2	HL_1QTQ_001	1QTQ	0.0000	2	B	tRNA	C	912	A	913	A	914	G	915	G	919	U	920	A	921	A	922	G	923	cWW	tSH	cWS	cSH
3	HL_4V7M_038	4V7M	0.7231	2	AY	tRNA	C	12	A	13	A	14	G	15	C	16	G	18	A	20	A	21	G	22	cWW	ntSH

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAGCGGUAAG	3

Non-Watson-Crick part of the motif

Sequence	Counts
AAGCGGUAA	3

Release history

Release	3.77	3.78	3.79	3.80	3.81	3.82	3.83	3.84	3.85	3.86	3.87
Date	2023-12-06	2024-01-03	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17	2024-08-14
Status	New id, > 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-tSH-cWS-F-F-F
Heat map statistics: Min 0.54 | Avg 0.47 | Max 0.87

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