Motif HL_86735.1 Version HL_86735.1 of this group appears in releases 3.85 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6FQ3_001 | 6FQ3 | 0.0533 | 0 | B | RNA (13-mer) | U | 5 | C | 6 | C | 7 | A | 8 | A | 9 | cWW |
| 2 | HL_6FQL_001 | 6FQL | 0.0000 | 0 | B | RNA (13-mer) | U | 5 | U | 6 | U | 7 | A | 8 | A | 9 | cWW |
| 3 | HL_8C3A_045 | 8C3A | 0.2650 | 0 | 1 | LSU rRNA | G | 2088 | G | 2089 | U | 2090 | A | 2091 | C | 2092 | cWW |
| 4 | HL_5TBW_045 | 5TBW | 0.3289 | 0 | 1 | LSU rRNA | G | 2110 | G | 2111 | U | 2112 | A | 2113 | C | 2114 | cWW |
| 5 | HL_5B2P_004 | 5B2P | 0.8113 | 0 | B | Guide RNA | U | 82 | U | 83 | U | 84 | G | 85 | A | 86 | cWW |
| 6 | HL_4Z0C_002 | 4Z0C | 0.9705 | 3 | C | DNA (5'-R(P*AP*CP*GP*GP*AP*AP*AP*GP*AP*CP*CP*CP*C)-3') | G | 4 | A | 6 | G | 8 | A | 9 | C | 11 | cWW |
| 7 | HL_8C3A_209 | 8C3A | 1.1745 | 1 | CM | SSU rRNA | C | 762 | C | 763 | U | 764 | U | 765 | G | 767 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAC | 2 |
| UCCAA | 1 |
| UUUAA | 1 |
| UUUGA | 1 |
| GAAAGACC | 1 |
| CCUUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA | 2 |
| CCA | 1 |
| UUA | 1 |
| UUG | 1 |
| AAAGAC | 1 |
| CUUU | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.05 | Avg 0.63 | Max 1.17
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