Motif HL_87080.1 Version HL_87080.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5AXM_001 | 5AXM | 0.4589 | 3 | tRNA D-loop | P | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | G | 20 | A | 21 | G | 22 | cWW | ncWS | |
| 2 | HL_4MGN_002 | 4MGN | 0.0000 | 2 | tRNA D-loop | B | tRNA | C | 13 | A | 14 | G | 15 | G | 18 | U | 19 | A | 20 | G | 21 | cWW | ncWS | cSH |
| 3 | HL_4RDX_001 | 4RDX | 0.7075 | 4 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUUGGGAG | 1 |
| CAGUGGUAG | 1 |
| CAGCUGGUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUUGGGA | 1 |
| AGUGGUA | 1 |
| AGCUGGUUA | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (3)
- Basepair signature
- cWW-cWS-R-R-R
- Heat map statistics
- Min 0.46 | Avg 0.42 | Max 0.74
Coloring options: