Motif HL_87136.1 Version HL_87136.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4A1B_027 | 4A1B | 0.3507 | 0 | 1 | 26S RRNA | G | 1175 | G | 1176 | A | 1177 | U | 1178 | G | 1179 | A | 1180 | A | 1181 | C | 1182 | cWW |
| 2 | HL_3U5H_026 | 3U5H | 0.3128 | 0 | 5 | 25S rRNA | G | 1148 | G | 1149 | A | 1150 | U | 1151 | G | 1152 | A | 1153 | A | 1154 | C | 1155 | cWW |
| 3 | HL_1S72_029 | 1S72 | 0.0936 | 0 | 0 | LSU rRNA | G | 1076 | G | 1077 | A | 1078 | A | 1079 | C | 1080 | A | 1081 | A | 1082 | C | 1083 | cWW |
| 4 | HL_3V2F_028 | 3V2F | 0.0000 | 0 | A | 23S Ribosomal RNA | G | 978 | G | 979 | A | 980 | A | 981 | C | 982 | A | 983 | A | 984 | C | 985 | cWW |
| 5 | HL_2ZJR_027 | 2ZJR | 0.2276 | 0 | X | LSU rRNA | G | 989 | A | 990 | A | 991 | A | 992 | C | 993 | A | 994 | A | 995 | C | 996 | cWW |
| 6 | HL_2QBG_029 | 2QBG | 0.4753 | 0 | B | 23S rRNA | G | 978 | A | 979 | A | 980 | A | 981 | C | 982 | A | 983 | A | 984 | C | 985 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUGAAC | 2 |
| GGAACAAC | 2 |
| GAAACAAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUGAA | 2 |
| GAACAA | 2 |
| AAACAA | 2 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_87136.1 | Only in the parent motif |
|---|---|---|---|
| HL_18082.1 Compare | HL_2ZJR_027, HL_2QBG_029, HL_1S72_029 | HL_4A1B_027, HL_3V2F_028, HL_3U5H_026 | HL_1S72_046, HL_2ZJR_044, HL_3PYO_044, HL_2QBG_046, HL_3PYO_028, HL_3IVK_002, HL_3IVK_007 |
Children motifs
| Child motif | Common motif instances | Only in HL_87136.1 | Only in the child motif |
|---|---|---|---|
| HL_87136.2 Compare | HL_2QBG_029, HL_4A1B_027, HL_3V2F_028, HL_1S72_029, HL_3U5H_026 | HL_2ZJR_027 | HL_4IOA_027 |
- Annotations
-
- (6)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.31 | Max 0.60
Coloring options: