Motif HL_87136.5 Version HL_87136.5 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_019 | 1VW3 | 0.4354 | 0 | A | 21S ribosomal RNA | G | 904 | A | 905 | A | 906 | A | 907 | C | 908 | A | 909 | G | 910 | C | 911 | cWW |
| 2 | HL_4IOA_027 | 4IOA | 0.1811 | 0 | X | LSU rRNA | G | 989 | A | 990 | A | 991 | A | 992 | C | 993 | A | 994 | A | 995 | C | 996 | cWW |
| 3 | HL_4NVV_027 | 4NVV | 0.0000 | 0 | A | 23S Ribosomal RNA | G | 1024 | G | 1025 | A | 1026 | A | 1027 | C | 1028 | A | 1029 | A | 1030 | C | 1031 | cWW |
| 4 | HL_1S72_029 | 1S72 | 0.1122 | 0 | 0 | LSU rRNA | G | 1076 | G | 1077 | A | 1078 | A | 1079 | C | 1080 | A | 1081 | A | 1082 | C | 1083 | cWW |
| 5 | HL_4A1B_027 | 4A1B | 0.3454 | 0 | 1 | 26S RRNA | G | 1175 | G | 1176 | A | 1177 | U | 1178 | G | 1179 | A | 1180 | A | 1181 | C | 1182 | cWW |
| 6 | HL_3U5H_026 | 3U5H | 0.3044 | 0 | 5 | 25S rRNA | G | 1148 | G | 1149 | A | 1150 | U | 1151 | G | 1152 | A | 1153 | A | 1154 | C | 1155 | cWW |
| 7 | HL_1VWW_026 | 1VWW | 0.4298 | -4 | 5 | 28S ribosomal RNA | G | 1886 | G | 1887 | A | 1888 | U | 1889 | G | 1890 | A | 1891 | A | 1892 | C | 1893 | ncWW |
| 8 | HL_1VX6_026 | 1VX6 | 0.4857 | 0 | A | 28S ribosomal RNA | G | 1276 | G | 1277 | A | 1278 | U | 1279 | G | 1280 | C | 1281 | U | 1282 | C | 1283 | cWW |
| 9 | HL_4CUV_026 | 4CUV | 0.4345 | 0 | 1 | 25S RRNA | G | 1148 | G | 1149 | A | 1150 | U | 1151 | G | 1152 | A | 1153 | A | 1154 | C | 1155 | cWW |
| 10 | HL_2QBG_029 | 2QBG | 0.4685 | 0 | B | 23S rRNA | G | 978 | A | 979 | A | 980 | A | 981 | C | 982 | A | 983 | A | 984 | C | 985 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUGAAC | 3 |
| GAAACAAC | 2 |
| GGAACAAC | 2 |
| GAAACAGC | 1 |
| GCCC | 1 |
| GGAUGCUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUGAA | 3 |
| AAACAA | 2 |
| GAACAA | 2 |
| AAACAG | 1 |
| CC | 1 |
| GAUGCU | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_87136.5 | Only in the parent motif |
|---|---|---|---|
| HL_87136.4 Compare | HL_3U5H_026, HL_4NVV_027, HL_4A1B_027, HL_1S72_029, HL_4IOA_027, HL_4CUV_026, HL_2QBG_029, HL_1VW3_019 | HL_1VWW_026, HL_1VX6_026 |
Children motifs
| Child motif | Common motif instances | Only in HL_87136.5 | Only in the child motif |
|---|---|---|---|
| HL_87136.6 Compare | HL_3U5H_026, HL_4A1B_027, HL_1VW3_019, HL_1S72_029, HL_4IOA_027, HL_1VWW_026, HL_4CUV_026, HL_2QBG_029, HL_1VX6_026 | HL_4NVV_027 | HL_4QCN_027 |
- Annotations
-
- (10)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.11 | Avg 0.38 | Max 0.66
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