HL_1VX6_026

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUGCUC

Length

8 nucleotides

Bulged bases

1VX6|1|A|C|1281, 1VX6|1|A|U|1282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87136.7

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

10

Unit IDs

1VX6|1|A|G|1276
1VX6|1|A|G|1277
1VX6|1|A|A|1278
1VX6|1|A|U|1279
1VX6|1|A|G|1280
1VX6|1|A|C|1281
1VX6|1|A|U|1282
1VX6|1|A|C|1283

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA