Motif HL_87136.7 Version HL_87136.7 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8
1	HL_2QBG_029	2QBG	0.4670	B	23S rRNA	G	978	A	979	A	980	A	981	C	982	A	983	A	984	C	985	cWW
2	HL_4CUV_026	4CUV	0.4299	1	25S RRNA	G	1148	G	1149	A	1150	U	1151	G	1152	A	1153	A	1154	C	1155	cWW
3	HL_1VX6_026	1VX6	0.4834	A	28S ribosomal RNA	G	1276	G	1277	A	1278	U	1279	G	1280	C	1281	U	1282	C	1283	cWW
4	HL_4W21_026	4W21	0.3869	5	28S ribosomal RNA	G	1886	G	1887	A	1888	U	1889	G	1890	A	1891	A	1892	C	1893	cWW
5	HL_3U5H_026	3U5H	0.3040	5	25S rRNA	G	1148	G	1149	A	1150	U	1151	G	1152	A	1153	A	1154	C	1155	cWW
6	HL_4A1B_027	4A1B	0.3473	1	26S RRNA	G	1175	G	1176	A	1177	U	1178	G	1179	A	1180	A	1181	C	1182	cWW
7	HL_1S72_029	1S72	0.1011	0	LSU rRNA	G	1076	G	1077	A	1078	A	1079	C	1080	A	1081	A	1082	C	1083	cWW
8	HL_4QCN_027	4QCN	0.0000	A	23S Ribosomal RNA	G	1024	G	1025	A	1026	A	1027	C	1028	A	1029	A	1030	C	1031	cWW
9	HL_4IOA_027	4IOA	0.1670	X	LSU rRNA	G	989	A	990	A	991	A	992	C	993	A	994	A	995	C	996	cWW
10	HL_1VW3_019	1VW3	0.4394	A	21S ribosomal RNA	G	904	A	905	A	906	A	907	C	908	A	909	G	910	C	911	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAUGAAC	4
GAAACAAC	2
GGAACAAC	2
GGAUGCUC	1
GAAACAGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAUGAA	4
AAACAA	2
GAACAA	2
GAUGCU	1
AAACAG	1

Release history

Release	1.18
Date	2014-10-09
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in HL_87136.7	Only in the parent motif
HL_87136.6 Compare	HL_4QCN_027, HL_3U5H_026, HL_4A1B_027, HL_1S72_029, HL_4IOA_027, HL_1VX6_026, HL_4CUV_026, HL_2QBG_029, HL_1VW3_019	HL_4W21_026	HL_1VWW_026

Children motifs

This motif has no children motifs.

Annotations: (10)
Basepair signature: cWW-R-R-R-R-R
Heat map statistics: Min 0.10 | Avg 0.38 | Max 0.64

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