Motif HL_87993.1 Version HL_87993.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J79_022 | 3J79 | 0.1164 | 2 | A | LSU rRNA | G | 1029 | C | 1030 | G | 1031 | A | 1033 | A | 1034 | A | 1036 | C | 1037 | cWW | cWW | tSW |
| 2 | HL_4V88_134 | 4V88 | 0.0821 | 2 | A5 | LSU rRNA | G | 910 | C | 911 | G | 912 | A | 914 | A | 915 | A | 917 | C | 918 | cWW | cWW | tSW |
| 3 | HL_4V8P_182 | 4V8P | 0.0000 | 2 | F1 | LSU rRNA | G | 935 | C | 936 | G | 937 | A | 939 | A | 940 | A | 942 | C | 943 | cWW | cWW | tSW |
| 4 | HL_4V91_021 | 4V91 | 0.0974 | 2 | 1 | LSU rRNA | G | 910 | C | 911 | G | 912 | A | 914 | A | 915 | A | 917 | C | 918 | cWW | cWW | tSW |
| 5 | HL_5AJ0_024 | 5AJ0 | 0.1497 | 2 | A2 | LSU rRNA | G | 1609 | C | 1610 | G | 1611 | A | 1613 | A | 1614 | A | 1616 | C | 1617 | cWW | ncWW | tSW |
| 6 | HL_3J7P_021 | 3J7P | 0.2176 | 2 | 5 | LSU rRNA | G | 1627 | C | 1628 | G | 1629 | A | 1631 | A | 1632 | A | 1634 | C | 1635 | cWW | ||
| 7 | HL_3J7Y_010 | 3J7Y | 0.3242 | 2 | A | LSU rRNA | G | 1988 | C | 1989 | G | 1990 | C | 1992 | A | 1993 | A | 1995 | C | 1996 | cWW | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGAAAGAC | 6 |
| GCGACAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAAAGA | 6 |
| CGACAAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-tSW-R
- Heat map statistics
- Min 0.08 | Avg 0.18 | Max 0.35
Coloring options: