Motif HL_89881.1 Version HL_89881.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6CZR_072 | 6CZR | 0.1460 | 1 | 1a | SSU rRNA | U | 13 | U | 14 | G | 16 | A | 17 | U | 18 | C | 19 | C | 20 | U | 21 | G | 22 | G | 23 | cWW | tHW | |
| 2 | HL_5J7L_001 | 5J7L | 0.0000 | 1 | AA | SSU rRNA | U | 12 | U | 13 | G | 15 | A | 16 | U | 17 | C | 18 | A | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW | |
| 3 | HL_4LFB_001 | 4LFB | 0.0653 | 1 | A | SSU rRNA | U | 12 | U | 13 | G | 15 | A | 16 | U | 17 | C | 18 | C | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW | |
| 4 | HL_4V88_186 | 4V88 | 0.1677 | 1 | A6 | SSU rRNA | G | 7 | U | 8 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | tHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUGAUCCUGG | 2 |
| UUUGAUCAUGG | 1 |
| GUUGAUCCUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGAUCCUG | 3 |
| UUGAUCAUG | 1 |
- Annotations
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.11 | Max 0.17
Coloring options: